Open Directory - Science: Biology: Biochemistry and Molecular Biology: Biomolecules: Proteins and Enzymes: Software

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Proteomics@ (4)

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Science: Biology: Biochemistry and Molecular Biology: Biomolecules: Software (30)

CMD Bioscience - Specialists in the use of computational methods to model and engineer protein-protein interactions. The "Affinity" algorithm is designed to predict protein-protein binding affinities and is free for academic users.
Calculation of Protein Isoelectric Point - Tool for the online estimation of protein isoelectric points, or download a free program to calculate pI.
Global Range Molecular Matching - GRAMM, a program for modeling docking for enzymology and receptor interactions of hormones and drugs. Includes web server and free download options maintained at the University of Kansas, Lawrence.
HOPPscore - Application for evaluating the structural quality of theoretical or experimental protein structures. Proteins are evaluated by comparing short fragments of structure to a reference dictionary of fragments from high resolution structures.
bioYALP: For Biologists, Yet Another Lipoprotein Predictor - Bioinformatics tool for lipoprotein prediction which is able to analyse protein sequences or a proteome and list possible lipoproteins. It has been tested on bacteria.

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Last update: Monday, November 3, 2008 6:43:39 PM EST - edit

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